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Bioinformatics Toolbox provides algorithms and apps for Next Generation Sequencing (NGS), microarray analysis, mass spectrometry, and gene ontology. Using toolbox functions, you can read genomic and proteomic data from standard file formats such as SAM, FASTA, CEL, and CDF, as well as from online databases such as the NCBI Gene Expression Omnibus and GenBank. You can explore and visualize this data with sequence browsers, spatial heatmaps, and clustergrams. The toolbox also provides statistical techniques for detecting peaks, imputing values for missing data, and selecting features.
You can combine toolbox functions to support common bioinformatics workflows. You can use ChIP-Seq data to identify transcription factors analyze RNA-Seq data to identify differentially expressed genes identify copy number variants and SNPs in microarray data and classify protein profiles using mass spectrometry data.
The Bioinformatics Toolbox product extends the MATLAB environment to provide an integrated software environment for genome and proteome analysis. Scientists and engineers can answer questions, solve problems, prototype new algorithms, and build applications for drug discovery and design, genetic engineering, and biological research. An introduction to these features will help you to develop a conceptual model for working with the toolbox and your biological data.
The Bioinformatics Toolbox product includes many functions to help you with genome and proteome analysis. Most functions are implemented in the MATLAB programming language, with the source available for you to view. This open environment lets you explore and customize the existing toolbox algorithms or develop your own.
You can use the basic bioinformatic functions provided with this toolbox to create more complex algorithms and applications. These robust and well-tested functions are the functions that you would otherwise have to create yourself.
Getting Started
High-Throughput Sequence Analysis
Sequence Analysis
Microarray Analysis
Phylogenetic Analysis
Mass Spectrometry and Bioanalytics